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Difference between revisions of "BioMISC"

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| class="mbox-test" | JUST PUBLISHED (co-authored): [https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1274-4 ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline. BMC Bioinformatics 2016 Oct] ''11:43, 18 November 2016 (EST)'' Based on [[Tao Liu]]'s previous work in [http://liulab.dfci.harvard.edu/ Xiaole Shirley Liu] lab.
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| class="mbox-test" | JUST PUBLISHED (co-authored): [http://nar.oxfordjournals.org/content/early/2016/10/25/nar.gkw983.long Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse. Nucleic Acid Research 2016 Oct] ''11:43, 18 November 2016 (EST)'' Based on [[Tao Liu]]'s previous work in [http://liulab.dfci.harvard.edu/ Xiaole Shirley Liu] lab.
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| class="mbox-test" | JUST PUBLISHED: [http://www.pnas.org/content/early/2015/09/09/1508749112.abstract Regional centromeres in the yeast Candida lusitaniae lack pericentromeric heterochromatin. Proceedings of the National Academy of Sciences of the United States of America 2015 Early-Edition] ''16:49, 14 September 2015 (EDT)''
 
| class="mbox-test" | JUST PUBLISHED: [http://www.pnas.org/content/early/2015/09/09/1508749112.abstract Regional centromeres in the yeast Candida lusitaniae lack pericentromeric heterochromatin. Proceedings of the National Academy of Sciences of the United States of America 2015 Early-Edition] ''16:49, 14 September 2015 (EDT)''
Collaboration work with [http://biology.buffalo.edu/faculty/rusche/ Laura Rusche] lab  
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Collaboration work with [http://biology.buffalo.edu/faculty/rusche/ Laura Rusche] lab. [[Lisha Zhu]] is the co-first author.
 
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| class="mbox-test" | JUST PUBLISHED: [http://onlinelibrary.wiley.com/doi/10.1002/art.39135/abstract Disease-associated SNPs From non-coding regions in juvenile idiopathic arthritis are located within or adjacent to functional genomic elements of human neutrophils and CD4+ T Cells. Arthritis & Rheumatology 2015 In-Print] ''15:03, 28 April 2015 (EDT)''  
 
| class="mbox-test" | JUST PUBLISHED: [http://onlinelibrary.wiley.com/doi/10.1002/art.39135/abstract Disease-associated SNPs From non-coding regions in juvenile idiopathic arthritis are located within or adjacent to functional genomic elements of human neutrophils and CD4+ T Cells. Arthritis & Rheumatology 2015 In-Print] ''15:03, 28 April 2015 (EDT)''  
Collaboration work with [https://medicine.buffalo.edu/faculty/profile.html?ubit=jamesjar  James Jarvis] lab  
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Collaboration work with [https://medicine.buffalo.edu/faculty/profile.html?ubit=jamesjar  James Jarvis] lab. [[Lisha Zhu]] is the co-first author. [[Tao Liu]] is the co-last author.
 
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| class="mbox-test" | JUST PUBLISHED: [http://www.nature.com/nature/journal/v512/n7515/full/nature13415.html Comparative analysis of metazoan chromatin organization. Nature 2014: 512(449)] ''16:15, 27 August 2014 (EDT)''
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| class="mbox-test" | JUST PUBLISHED: [http://www.nature.com/nature/journal/v512/n7515/full/nature13415.html Comparative analysis of metazoan chromatin organization. Nature 2014: 512(449)] ''16:15, 27 August 2014 (EDT)'' [[Tao Liu]] is the co-first author.
[[File:Modencode datasets.png|500px|center]]
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[[File:Modencode datasets.png|500px|center]]
 
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Latest revision as of 12:43, 18 November 2016

Tao Liu lab at SUNY at Buffalo

News

JUST PUBLISHED (co-authored): ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline. BMC Bioinformatics 2016 Oct 11:43, 18 November 2016 (EST) Based on Tao Liu's previous work in Xiaole Shirley Liu lab.
JUST PUBLISHED (co-authored): Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse. Nucleic Acid Research 2016 Oct 11:43, 18 November 2016 (EST) Based on Tao Liu's previous work in Xiaole Shirley Liu lab.
JUST PUBLISHED: Regional centromeres in the yeast Candida lusitaniae lack pericentromeric heterochromatin. Proceedings of the National Academy of Sciences of the United States of America 2015 Early-Edition 16:49, 14 September 2015 (EDT)

Collaboration work with Laura Rusche lab. Lisha Zhu is the co-first author.

JUST PUBLISHED: Disease-associated SNPs From non-coding regions in juvenile idiopathic arthritis are located within or adjacent to functional genomic elements of human neutrophils and CD4+ T Cells. Arthritis & Rheumatology 2015 In-Print 15:03, 28 April 2015 (EDT)

Collaboration work with James Jarvis lab. Lisha Zhu is the co-first author. Tao Liu is the co-last author.

JUST PUBLISHED: Comparative analysis of metazoan chromatin organization. Nature 2014: 512(449) 16:15, 27 August 2014 (EDT) Tao Liu is the co-first author.
Modencode datasets.png


Our first Ph.D. student joining the lab! Welcome Evan D. Tarbell! 11:42, 9 June 2014 (EST)
Welcome our new postdoc Lisha Zhu! 17:42, 1 December 2013 (EST)
JUST PUBLISHED: Practical Guidelines for the Comprehensive Analysis of ChIP-seq Data. PLoS Comput Biol 2013: 9(11) 21:58, 14 November 2013 (EST)
Welcome to Buffalo! Our first postdoc, Liqing Tian. 21:52, 14 November 2013 (EST)
Our biomisc site is armed with mediawiki+strapping+bootstrap . 10:46, 6 September 2013 (EDT)
Our server 'biomisc.org' is UP. It has another name: ledzeppelin.ccr.buffalo.edu. 20:00, 12 July 2013 (EDT)
UCSC browser mirror site and Galaxy clone are set up. 22:36, 11 August 2013 (EDT)


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